TAP GRAS in Spirogyra sp.

Full lineage¹: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Zygnemophyceae; Zygnematophycidae; Zygnematales; Zygnemataceae; Spirogyra; unclassified Spirogyra

Protein source: Delaux et al. (2015) Proc Natl Acad Sci U S A 112:13390-5


The colour code corresponds to the rules for the domains:

should be contained
should not be contained

Domain rules

GRAS

(Domain names are clickable)



List of proteins (34)

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c0_seq1_5[20 - 2197] len=2958 path=[1:0-2135 6240:2136-2136 2137:2137-2957]
c0_seq11_1[431 - 2407] len=2407 path=[1:0-140 142:141-304 306:305-435 5275:436-545 437:546-1247 1139:1248-1270 1162:1271-1405 1297:1406-1856 6792:1857-2060 1748:2061-2406]
c0_seq12_3[1048 - 2112] len=2399 path=[1:0-140 306:141-271 5275:272-381 437:382-1083 1162:1084-1218 1297:1219-1669 1748:1670-2015 2094:2016-2031 2110:2032-2398]
c0_seq13_2[1212 - 2384] len=2384 path=[1:0-140 142:141-304 306:305-435 5275:436-545 437:546-1247 1162:1248-1382 1297:1383-1833 6792:1834-2037 1748:2038-2383]
c0_seq14_1[4 - 2025] len=2312 path=[1:0-140 306:141-271 437:272-973 1139:974-996 1162:997-1131 1297:1132-1582 1748:1583-1928 2094:1929-1944 2110:1945-2311]
c0_seq15_2[938 - 2002] len=2289 path=[1:0-140 306:141-271 437:272-973 1162:974-1108 1297:1109-1559 1748:1560-1905 2094:1906-1921 2110:1922-2288]
c0_seq17_2[267 - 2243] len=2243 path=[1:0-140 306:141-271 5275:272-381 437:382-1083 1139:1084-1106 1162:1107-1241 1297:1242-1692 6792:1693-1896 1748:1897-2242]
c0_seq19_3[1048 - 2220] len=2220 path=[1:0-140 306:141-271 5275:272-381 437:382-1083 1162:1084-1218 1297:1219-1669 6792:1670-1873 1748:1874-2219]
c0_seq1_1[270 - 2393] len=2680 path=[1:0-140 142:141-304 306:305-435 437:436-1137 1139:1138-1160 1162:1161-1295 1297:1296-1746 6792:1747-1950 1748:1951-2296 2094:2297-2312 2110:2313-2679]
c0_seq21_1[4 - 2133] len=2133 path=[1:0-140 306:141-271 437:272-973 1139:974-996 1162:997-1131 1297:1132-1582 6792:1583-1786 1748:1787-2132]
c0_seq2_2[1102 - 2370] len=2657 path=[1:0-140 142:141-304 306:305-435 437:436-1137 1162:1138-1272 1297:1273-1723 6792:1724-1927 1748:1928-2273 2094:2274-2289 2110:2290-2656]
c0_seq3_1[431 - 2299] len=2586 path=[1:0-140 142:141-304 306:305-435 5275:436-545 437:546-1247 1139:1248-1270 1162:1271-1405 1297:1406-1856 1748:1857-2202 2094:2203-2218 2110:2219-2585]
c0_seq4_2[1212 - 2276] len=2563 path=[1:0-140 142:141-304 306:305-435 5275:436-545 437:546-1247 1162:1248-1382 1297:1383-1833 1748:1834-2179 2094:2180-2195 2110:2196-2562]
c0_seq5_2[938 - 2206] len=2493 path=[1:0-140 306:141-271 437:272-973 1162:974-1108 1297:1109-1559 6792:1560-1763 1748:1764-2109 2094:2110-2125 2110:2126-2492]
c0_seq6_1[270 - 2189] len=2476 path=[1:0-140 142:141-304 306:305-435 437:436-1137 1139:1138-1160 1162:1161-1295 1297:1296-1746 1748:1747-2092 2094:2093-2108 2110:2109-2475]
c0_seq7_2[1102 - 2166] len=2453 path=[1:0-140 142:141-304 306:305-435 437:436-1137 1162:1138-1272 1297:1273-1723 1748:1724-2069 2094:2070-2085 2110:2086-2452]
c0_seq9_2[267 - 2135] len=2422 path=[1:0-140 306:141-271 5275:272-381 437:382-1083 1139:1084-1106 1162:1107-1241 1297:1242-1692 1748:1693-2038 2094:2039-2054 2110:2055-2421]
c0_seq3_1[1 - 2265] len=2484 path=[2462:0-134 2597:135-146 2609:147-197 2660:198-263 2726:264-266 2729:267-1224 3687:1225-1325 3788:1326-1350 3813:1351-1422 3885:1423-1476 3939:1477-1491 3954:1492-1603 4066:1604-1626 4089:1627-2483]
c0_seq4_1[1 - 2253] len=2472 path=[2462:0-134 2609:135-185 2660:186-251 2726:252-254 2729:255-1212 3687:1213-1313 3788:1314-1338 3813:1339-1410 3885:1411-1464 3939:1465-1479 3954:1480-1591 4066:1592-1614 4089:1615-2471]
c0_seq5_5[781 - 1680] len=1899 path=[2462:0-134 2597:135-146 2609:147-197 5402:198-263 5468:264-266 5471:267-607 3788:608-632 4946:633-837 3885:838-891 6316:892-906 3954:907-1018 4066:1019-1041 4089:1042-1898]
c0_seq6_4[541 - 1440] len=1659 path=[6995:0-23 5468:24-26 5471:27-367 3788:368-392 4946:393-597 3885:598-651 6316:652-666 3954:667-778 4066:779-801 4089:802-1658]
c0_seq10_3_rccomp11058_c0_seq10_3 [1930 - 770] (REVERSE SENSE) len=2397 path=[4343:0-88 13958:89-201 204:202-264 12589:265-269 272:270-316 4255:317-336 339:337-641 16813:642-643 16815:644-651 15166:652-862 12894:863-903 15745:904-982 13014:983-994 644:995-1009 659:1010-1045 695:1046-1063 713:1064-1203 853:1204-1255 905:1256-1301 951:1302-1321 971:1322-1869 13844:1870-1888 14890:1889-1889 13863:1890-1913 1562:1914-1952 13638:1953-2069 1721:2070-2128 14520:2129-2192 16618:2193-2193 14584:2194-2396]
c0_seq13_3_rccomp11058_c0_seq13_3 [1735 - 500] (REVERSE SENSE) len=2202 path=[1:0-202 204:203-265 267:266-270 272:271-317 319:318-337 339:338-642 12869:643-667 12894:668-708 12935:709-787 13014:788-799 644:800-814 659:815-850 695:851-868 713:869-1008 853:1009-1060 905:1061-1106 951:1107-1126 971:1127-1674 13844:1675-1693 14890:1694-1694 13863:1695-1718 1562:1719-1757 13638:1758-1874 1721:1875-1933 14520:1934-1997 16618:1998-1998 14584:1999-2201]
c0_seq14_3_rccomp11058_c0_seq14_3 [1734 - 499] (REVERSE SENSE) len=2201 path=[4343:0-88 13958:89-201 204:202-264 12589:265-269 272:270-316 4255:317-336 339:337-641 12869:642-666 12894:667-707 12935:708-786 13014:787-798 644:799-813 659:814-849 695:850-867 713:868-1007 853:1008-1059 905:1060-1105 951:1106-1125 971:1126-1673 13844:1674-1692 14890:1693-1693 13863:1694-1717 1562:1718-1756 13638:1757-1873 1721:1874-1932 14520:1933-1996 16618:1997-1997 14584:1998-2200]
c0_seq15_3_rccomp11058_c0_seq15_3 [1578 - 214] (REVERSE SENSE) len=2045 path=[1:0-202 204:203-265 267:266-270 272:271-317 319:318-337 339:338-642 644:643-657 659:658-693 695:694-711 713:712-851 853:852-903 905:904-949 951:950-969 971:970-1517 13844:1518-1536 14890:1537-1537 13863:1538-1561 1562:1562-1600 13638:1601-1717 1721:1718-1776 14520:1777-1840 16618:1841-1841 14584:1842-2044]
c0_seq16_3_rccomp11058_c0_seq16_3 [1577 - 213] (REVERSE SENSE) len=2044 path=[4343:0-88 13958:89-201 204:202-264 12589:265-269 272:270-316 4255:317-336 339:337-641 644:642-656 659:657-692 695:693-710 713:711-850 853:851-902 905:903-948 951:949-968 971:969-1516 13844:1517-1535 14890:1536-1536 13863:1537-1560 1562:1561-1599 13638:1600-1716 1721:1717-1775 14520:1776-1839 16618:1840-1840 14584:1841-2043]
c0_seq7_3_rccomp11058_c0_seq7_3 [1959 - 778] (REVERSE SENSE) len=2426 path=[1:0-202 204:203-265 267:266-270 272:271-317 319:318-337 339:338-642 16813:643-644 16815:645-652 12656:653-846 15908:847-847 12850:848-866 12869:867-891 12894:892-932 12935:933-1011 13014:1012-1023 644:1024-1038 659:1039-1074 695:1075-1092 713:1093-1232 853:1233-1284 905:1285-1330 951:1331-1350 971:1351-1898 13844:1899-1917 14890:1918-1918 13863:1919-1942 1562:1943-1981 13638:1982-2098 1721:2099-2157 14520:2158-2221 16618:2222-2222 14584:2223-2425]
c0_seq8_3_rccomp11058_c0_seq8_3 [1958 - 777] (REVERSE SENSE) len=2425 path=[4343:0-88 13958:89-201 204:202-264 12589:265-269 272:270-316 4255:317-336 339:337-641 16813:642-643 16815:644-651 12656:652-845 15908:846-846 12850:847-865 12869:866-890 12894:891-931 12935:932-1010 13014:1011-1022 644:1023-1037 659:1038-1073 695:1074-1091 713:1092-1231 853:1232-1283 905:1284-1329 951:1330-1349 971:1350-1897 13844:1898-1916 14890:1917-1917 13863:1918-1941 1562:1942-1980 13638:1981-2097 1721:2098-2156 14520:2157-2220 16618:2221-2221 14584:2222-2424]
c0_seq9_3_rccomp11058_c0_seq9_3 [1931 - 771] (REVERSE SENSE) len=2398 path=[1:0-202 204:203-265 267:266-270 272:271-317 319:318-337 339:338-642 16813:643-644 16815:645-652 15166:653-863 12894:864-904 15745:905-983 13014:984-995 644:996-1010 659:1011-1046 695:1047-1064 713:1065-1204 853:1205-1256 905:1257-1302 951:1303-1322 971:1323-1870 13844:1871-1889 14890:1890-1890 13863:1891-1914 1562:1915-1953 13638:1954-2070 1721:2071-2129 14520:2130-2193 16618:2194-2194 14584:2195-2397]
c0_seq1_13_rccomp12177_c0_seq1_13 [2671 - 431] (REVERSE SENSE) len=2965 path=[2943:0-2964]
c0_seq1_4[1 - 2370] len=5202 path=[4634:0-2363 9284:2364-2364 6998:2365-4300 9319:4301-4845 8934:4846-5201]
c0_seq2_4[1 - 2370] len=4657 path=[4634:0-2363 9284:2364-2364 6998:2365-4300 8934:4301-4656]
c0_seq1_4[3 - 2273] len=2757 path=[2777:0-1915 4693:1916-1918 4696:1919-2261 5667:2262-2262 5039:2263-2756]
c0_seq1_7[11 - 2452] len=3359 path=[1:0-980 982:981-993 995:994-2478 6837:2479-2500 2502:2501-2835 2837:2836-3358]
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A list of species letter codes included in the protein names can be found here (opens in new tab).

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¹ Information recieved using NCBI E-utilities and NCBI taxonomy database.
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